Enity Framework 6.0.0.0 : Unable to generate an explicit migration... with Code-based migration

The situation is :

1. Per tenant db.
2. Non-automatic Code-based based migration. The initial creation of the dbs is through Code First too. There are no preexisting dbs in the current scenario.
3. The exact db is not known during the generation of migration script becase there are many. The only thing I have is code - the Initial migration script based on the model in the beginning and the model with some modifications.
4. Existing dbs generated with initial script - everything works fine. Here is how I reproduce the problem :
5. Run PS command : Add-Migration -Name Initial -StartUpProjectName MyApp.Web -ProjectName MyApp.Migrations -ConfigurationTypeName "MyApp.Migrations.MyMigrationConfiguration" -ConnectionString "Data Source=.\SQLEXPRESS;Database=demo-db;Trusted_Connection=False;User ID=x;Password=x" -ConnectionProviderName "System.Data.SqlClient" - Works Fine
6. Run the app and the db is created. Stop the app. Make modification to the model.
7. Run PS command : Add-Migration -Name MySecondMigration -StartUpProjectName MyApp.Web -ProjectName MyApp.Migrations -ConfigurationTypeName "MyApp.Migrations.MyMigrationConfiguration" -ConnectionString "Data Source=.\SQLEXPRESS;Database=demo-db;Trusted_Connection=False;User ID=x;Password=x" -ConnectionProviderName "System.Data.SqlClient" - Boom.
8. Subtlety - The migrator does not even connect to MSSQL to check if the db even exists or has dbo.__MigrationHistory! I have goen further and turned off the MSSQL service! - It does not matter if I enter false db name or not or I turn off the entire MSSQL server - the error is the same and no connection is made. So how does it know a migration is pending when it does not check the database? I assume a bug.
9. I have __dbo.MigrationHistory created already with the Initial migration in it.
10. Error : Unable to generate an explicit migration because the following explicit migrations are pending: [201402121953301_Initial]. Apply the pending explicit migrations before attempting to generate a new explicit migration.

Here is my Configuration - nothing special :

public class MyMigrationConfiguration : DbMigrationsConfiguration<MyMigrationContext>
{
    public MyMigrationConfiguration()
    {
        AutomaticMigrationsEnabled = false;
        AutomaticMigrationDataLossAllowed = false;
        MigrationsNamespace = "---";
        MigrationsDirectory = "---";
    }
}

Here is the method with wich I create the dbs :

 public void CreateOrUpdateDb(string DbName)
        {
            try
            {
                string connectionString = _connectionStringProvider.GetConnectionString(DbName);
                DbMigrationsConfiguration cfg = CreateMigrationsConfig(connectionString);
                cfg.AutomaticMigrationsEnabled = false;
                cfg.AutomaticMigrationDataLossAllowed = false;
                DbMigrator dbMigrator = new DbMigrator(cfg);                              
                dbMigrator.Update();
            }
            catch (MigrationsException exception)
            {
                _logger.Error(string.Format("Error creating database '{0}'",DbName), exception);
            }
        }

I have already searched and read whatever I can find on the web but most examples include the standart Configuration.cs and the like. Nobody explains why should I run Enable-Migrations because it creates Configuration.cs but I provide the Configuration class myself and do not need this other class.

Here is the exception stack :

> System.Data.Entity.Migrations.Infrastructure.MigrationsPendingException: Unable to generate an explicit migration because the following explicit migrations are pending: [201402121953301_Initial]. Apply the pending explicit migrations before attempting to generate a new explicit migration.
   at System.Data.Entity.Migrations.DbMigrator.Scaffold(String migrationName, String namespace, Boolean ignoreChanges)
   at System.Data.Entity.Migrations.Design.MigrationScaffolder.Scaffold(String migrationName, Boolean ignoreChanges)
   at System.Data.Entity.Migrations.Design.ToolingFacade.ScaffoldRunner.Scaffold(MigrationScaffolder scaffolder)
   at System.Data.Entity.Migrations.Design.ToolingFacade.ScaffoldRunner.Run()
   at System.AppDomain.DoCallBack(CrossAppDomainDelegate callBackDelegate)
   at System.AppDomain.DoCallBack(CrossAppDomainDelegate callBackDelegate)
   at System.Data.Entity.Migrations.Design.ToolingFacade.Run(BaseRunner runner)
   at System.Data.Entity.Migrations.Design.ToolingFacade.Scaffold(String migrationName, String language, String rootNamespace, Boolean ignoreChanges)
   at System.Data.Entity.Migrations.AddMigrationCommand.Execute(String name, Boolean force, Boolean ignoreChanges)
   at System.Data.Entity.Migrations.AddMigrationCommand.<>c__DisplayClass2.<.ctor>b__0()

Is there any way to force the migrator to make the script without telling me that there are some pending migrations even though there are not? This is 100% bug in EF but I do not know how to get around it.